Flemming Steen Jørgensen

Flemming Steen Jørgensen

Professor


  1. Published

    Structural analysis of CYP2C9 and CYP2C5 and an evaluation of commonly used molecular modeling techniques. / Afzelius, Lovisa; Raubacher, Florian; Karlén, Anders; Jørgensen, Flemming Steen; Andersson, Tommy B; Masimirembwa, Collen M; Zamora, Ismael.

    In: Drug Metabolism and Disposition, Vol. 32, No. 11, 2004, p. 1218-29.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Homology building as a means to define antigenic epitopes on dihydrofolate reductase (DHFR) from Plasmodium falciparum. / Alifrangis, Michael; Christensen, Inge T; Jørgensen, Flemming S; Rønn, Anita M; Weng, Jimmy E; Chen, Ming; Bygbjerg, Ib C; Sirawaraporn, Worachart; Palarasah, Yaseelan; Koch, Claus.

    In: Malaria Journal, Vol. 3, 2004, p. 16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    In vitro evaluation of N-methyl amide tripeptidomimetics as substrates for the human intestinal di-/tri-peptide transporter hPEPT1. / Andersen, Rikke; Nielsen, Carsten Uhd; Begtrup, Mikael; Jørgensen, Flemming Steen; Brodin, Birger; Frokjaer, Sven; Steffansen, Bente.

    In: European Journal of Pharmaceutical Sciences, Vol. 28, No. 4, 2006, p. 325-35.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Development of a QSAR model for binding of tripeptides and tripeptidomimetics to the human intestinal di-/tripeptide transporter hPEPT1. / Andersen, Rikke; Jørgensen, Flemming Steen; Olsen, Lars; Våbenø, Jon; Thorn, Karina; Nielsen, Carsten Uhd; Steffansen, Bente.

    In: Pharmaceutical Research, Vol. 23, No. 3, 2006, p. 483-92.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Forudsigelser med hjælp fra det virtuelle rum. / Andersen, Rikke; Steffansen, Bente; Jørgensen, Flemming Steen; Nielsen, Carsten Uhd.

    In: Lægemiddelforskning, 2005, p. 24-25.

    Research output: Contribution to journalJournal articleCommunication

  6. Published

    peri-Interaction, ortho-interaction, and barriers to internal rotation. A dynamic nuclear magnetic resonance and molecular mechanics investigation of 1,2-dineopentylbenzene and 1,8-dineopentylnaphthalene. / Anderson, J Edgar; Barkel, David JD; Jørgensen, Flemming Steen.

    In: Journal of the Chemical Society. Perkin Transactions 2 (2001), No. 2, 01.02.1988, p. 199-202.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Conformational analysis of peri-interactions in napththalene derivatives. Ring inversion in CH2–X–CH2-bridged peri-naphthalenes. / Anderson, J Edgar; Jørgensen, Flemming Steen.

    In: Journal of the Chemical Society. Perkin Transactions 2 (2001), Vol. 1988, No. 4, 01.04.1988, p. 469-471.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Setting the anomeric effect against steric effects in simple acyclic acetals. Non-anomeric non-classical conformations. An n.m.r. and molecular mechanics investigation. / Anderson, J. Edgar; Heki, Katsuhiko; Hirota, Minoru; Jørgensen, Flemming Steen.

    In: Chemical communications (Cambridge, England), Vol. 1987, 1987, p. 554-555.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Conservation of a helix-stabilizing dipole moment in the PP-fold family of regulatory peptides. / Bjørnholm, B; Jørgensen, Flemming Steen; Schwartz, T W.

    In: Biochemistry, Vol. 32, No. 12, 1993, p. 2954-9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Structural and stereochemical requirements for interactions with subtypes of central excitatory amino acid receptors. / Brehm, Lotte; Christensen, Inge T; Nielsen, Birgitte; Reinhardt, Annemarie ; Ebert, Bjarke; Madsen, Ulf; Jørgensen, Flemming Steen; Hansen, Jan J.; Krogsgaard-Larsen, Povl.

    Frontiers in Drug Research; Alfred Benzon Symposium 28. ed. / B. Jensen; F. S. Jørgensen; H. Kofod. Copenhagen : Munksgaard , 1990. p. 92-105.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  11. Published

    Identification of a gene on chromosome 12q22 uniquely overexpressed in chronic lymphocytic leukemia. / Buhl, Anne Mette; Jurlander, Jesper; Jørgensen, Flemming Steen; Ottesen, Anne Marie; Cowland, Jack B; Gjerdrum, Lise Mette; Hansen, Brian V; Leffers, Henrik.

    In: Blood, Vol. 107, No. 7, 2006, p. 2904-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Towards an identification of the pyrethroid pharmacophore. A molecular modelling study of some pyrethroid esters. / Byberg, J R; Jørgensen, Flemming Steen; Klemmensen, P D.

    In: Journal of Computer - Aided Molecular Design, Vol. 1, No. 3, 1987, p. 181-95.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Substrate-enzyme interactions and catalytic mechanism in phospholipase C : a molecular modeling study using the GRID program. / Byberg, J R; Jørgensen, Flemming Steen; Hansen, S; Hough, E.

    In: Proteins: Structure, Function, and Bioinformatics, Vol. 12, No. 4, 1992, p. 331-8.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Conformational analysis and molecular modelling of a partial GABA(A) agonist and a glycine antagonist related to the GABA(A) agonist, THIP. / Byberg Buur, J. R.; Hjeds, H.; Krogsgaard-Larsen, P.; Jorgensen, F. S.

    In: Drug Design and Discovery, Vol. 10, No. 3, 01.12.1993, p. 213-229.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    3-mercaptopropanal. / Carlsen, Lars; Jørgensen, Flemming S.; Egsgaard, Helge; Nicolaisen, Flemming M.

    In: Journal of the Chemical Society, Perkin Transactions 2, No. 4, 01.01.1984, p. 609-613.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Molecular mechanics calculations of proteins. Comparison of different energy minimization strategies. / Christensen, I T; Jørgensen, Flemming Steen.

    In: Journal of Biomolecular Structure & Dynamics, Vol. 15, No. 3, 1997, p. 473-88.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Three-dimensional structures of human phospholipase A2 from pancreas and synovial fluid by model building. / Christensen, I T; Jørgensen, Flemming Steen; Svensson, L A; Högberg, T.

    In: Drug Design and Discovery, Vol. 10, No. 2, 1993, p. 101-13.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Conformational analysis of six- and twelve-membered ring compounds by molecular dynamics. / Christensen, I T; Jørgensen, Flemming Steen.

    In: Journal of Computer - Aided Molecular Design, Vol. 11, No. 4, 1997, p. 385-94.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Primary structure and conformational analysis of peptide methionine-tyrosine, a peptide related to neuropeptide Y and peptide YY isolated from lamprey intestine. / Conlon, J M; Bjørnholm, B; Jørgensen, Flemming Steen; Youson, J H; Schwartz, T W.

    In: European Journal of Biochemistry, Vol. 199, No. 2, 1991, p. 293-8.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Crystal and Molecular Structure of anti-Sesquinorbornene. / Gaihede, Michael; Jørgensen, Flemming S.; Kopecky, Karl R.; Watson, William H.; Kashyap, Ram P.

    In: Journal of Organic Chemistry, Vol. 50, No. 22, 01.01.1985, p. 4395-4397.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    AMPA receptor agonists: structural, conformational and stereochemical aspects. / Hansen, JJ; Jørgensen, FS; Lund, Trine Meldgaard; Nielsen, B; Reinhardt, A; Breum, I; Brehm, L; Krogsgaard-Larsen, P.

    Excitatory Amino Acid Receptors. ed. / Povl Krogsgaard-Larsen; Jan J Hansen. Ellis Horwood: Chichester, 1992.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  22. Published

    Cyclynes. Part 5. Pericyclynes: "exploded cycloalkanes" with unusual orbital interactions and conformational properties. MM2 and STO-3G calculations, x-ray crystal structures, photoelectron spectra, and electron transmission spectra. / Houk, K. N.; Scott, Lawrence T.; Rondan, Nelson G.; Spellmeyer, David C.; Reinhardt, Gerd; Hyun, James L.; DeCicco, Gary J.; Weiss, Robert; Chen, Marie H. M.; Bass, Lawrence S.; Clardy, Jon; Jørgensen, Flemming Steen; Eaton, Thomas A.; Sarkozi, Victor; Petit, Christina M.; Ng, Lily; Jordan, Kenneth D.

    In: Journal of the American Chemical Society, Vol. 107, No. 23, 1985, p. 6556-6562.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Update on protein structure prediction : Results of the 1995 IRBM workshop. / Hubbard, T; Tramontano, A; Barton, G; Jones, D; Sippl, M; Valencia, A; Lesk, A; Moult, J; Rost, B; Sander, C; Schneider, R; Lahm, A; Leplae, R; Buta, C; Eisenstein, M; Fjellstrom, O; Floeckner, H; Grossmann, JG; Hansen, J; Citterich, MH; Jørgensen, Flemming Steen; MarchlerBauer, A; Osuna, J; Park, J; Reinhardt, A; dePouplana, LR; RojoDominguez, A; Saudek, V; Sinclair, J; Sturrock, S; Venclovas, C; Vinals, C.

    In: Folding and Design, Vol. 1, No. 3, 1996, p. R55-R63.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Conformational analysis of the fungicide fenpropimorph by molecular mechanics calculations and NMR spectroscopy. / Jensen, Jette Sandholm ; Jørgensen, Flemming Steen; Klemmensen, Per D.; Hacksell, Uli; Petersson, Ingrid.

    In: Journal of Pesticide Science, Vol. 36, 1992, p. 309-318.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Prediction methods and databases within chemoinformatics : emphasis on drugs and drug candidates. / Jónsdóttir, Svava Osk; Jørgensen, Flemming Steen; Brunak, Søren.

    In: Bioinformatics, Vol. 21, No. 10, 2005, p. 2145-60.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Cyclic Acetals. Structural Analysis of 1,3‐Dioxepine and Related Compounds. / Jørgensen, Flemming S.; Gajhede, Michael; Frei, Bruno.

    In: Helvetica Chimica Acta, Vol. 68, No. 8, 01.01.1985, p. 2148-2157.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Photoelectron spectra of some decahydrotrimethanoanthracenes : Observation of large π orbital interactions through six bonds and an apparent violation of the trans rule. / Jørgensen, Flemming S.; Paddon-Row, Michael N.; Patney, Harish K.

    In: Journal of the Chemical Society, Chemical Communications, No. 10, 01.01.1983, p. 573-575.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    1,2‐Oxathiolane – A Photoelectron Spectroscopic Study. / Jørgensen, Flemming S.; Carlsen, Lars.

    In: Chemische Berichte, Vol. 116, No. 6, 01.01.1983, p. 2374-2377.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    On the presence of extremely short H...H non-bonded distances, and orbital interactions through eight s bonds or through two methylene groups in tetramethanonaphthacenes. / Jørgensen, Flemming Steen; Paddon-Row, Michael N.

    In: Tetrahedron Letters, Vol. 24, No. 48, 1983, p. 5415 - 5418.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Molecular modelling of GABA uptake inhibitors. / Jørgensen, Flemming Steen; Thøgersen, Henning.

    In: Nordic Journal of Psychiatry, Vol. 41, No. 6, 01.01.1987, p. 483-486.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    cis-disulfides protelectron spectrum of a 6,7-dithiabicyclo[3.2.1]octane. / Jørgensen, Flemming Steen; McCabe, Peter H.

    In: Tetrahedron Letters, Vol. 24, No. 3, 1983, p. 319-322.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    On the molecular and electronic features of syn- and anti-sequinorbornene. / Jørgensen, Flemming Steen.

    In: Tetrahedron Letters, Vol. 24, No. 47, 1983, p. 5289 - 5292.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Crystallization and preliminary X-ray analysis of a PNA-DNA complex. / Kastrup, Jette Sandholm Jensen; Pilgaard, Michael; Jørgensen, Flemming Steen; Nielsen, Peter E.; Rasmussen, Hanne B.

    In: FEBS Letters, Vol. 363, 1995, p. 115-117.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    GABAA receptor agonists, partial agonists, and antagonists. Design and therapeutic prospects. / Krogsgaard-Larsen, P; Frølund, B; Jørgensen, Flemming Steen; Schousboe, A.

    In: Journal of Medicinal Chemistry, Vol. 37, No. 16, 1994, p. 2489-505.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Excitatory amino acid receptors: multiplicity and structural requirements for activation and blockade. / Krogsgaard-Larsen, P; Lund, Trine Meldgaard; Jorgensen, FS; Brehn, L.

    Excitatory amino acids and synaptic function. ed. / H Wheal; A Thomson. London : Academic Press, 1991. p. 1-17 (Excitatory Amino Acids and Synaptic Transmission, Academic Press, London).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  36. Published

    Heterocyclic muscarinic agonists : Structural and therapeutic aspects. / Krogsgaard-Larsen, P.; Jensen, B.; Falch, E.; Jorgensen, F. S.

    In: Drugs of the Future, Vol. 14, No. 6, 01.01.1989, p. 541-561.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Evaluation and comparison of 3D-QSAR CoMSIA models for CDK1, CDK5, and GSK-3 inhibition by paullones. / Kunick, Conrad; Lauenroth, Kathrin; Wieking, Karen; Xie, Xu; Schultz, Christiane; Gussio, Rick; Zaharevitz, Daniel; Leost, Maryse; Meijer, Laurent; Weber, Alexander; Jørgensen, Flemming Steen; Lemcke, Thomas.

    In: Journal of Medicinal Chemistry, Vol. 47, No. 1, 2004, p. 22-36.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    3D-QSAR. Towards a quantitative three-dimensional description of muscarinic agonists. / Lagersted, A.; Jørgensen, F. S.

    In: Progress in Clinical and Biological Research, Vol. 291, 01.01.1989, p. 333-336.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Towards an understanding of drug resistance in malaria : three-dimensional structure of Plasmodium falciparum dihydrofolate reductase by homology building. / Lemcke, T; Christensen, I T; Jørgensen, Flemming Steen.

    In: Bioorganic & Medicinal Chemistry, Vol. 7, No. 6, 1999, p. 1003-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Conformational and pharmacological characterization of 4-AHCP, a bicyclic homologue of the excitatory amino acid receptor agonist AMPA. / Lund, Trine Meldgaard; Madsen, U; Ebert, B; Jorgensen, FS; Krogsgaard-Larsen, P.

    In: Med. Chem. Res, Vol. 1, 1991, p. 136-141.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Relationship between structure, conformational flexibility, and biological activity of agonists and antagonists at the N-methyl-D-aspartic acid subtype of excitatory amino acid receptors. / Madsen, U; Brehm, L; Schaumburg, Kjeld; Jørgensen, Flemming Steen; Krogsgaard-Larsen, P.

    In: Journal of Medicinal Chemistry, Vol. 33, No. 1, 1990, p. 374-80.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Human peptide transporters : Therapeutic applications. / Nielsen, Carsten Uhd; Brodin, Birger; Jørgensen, Flemming Steen; Frokjaer, Sven; Steffansen, Bente.

    In: Expert Opinion on Therapeutic Patents, Vol. 12, No. 9, 01.09.2002, p. 1329-1350.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Crystal structure of merosinigrin, an (ap,ap)-monothioacetal; structural properties of the thioglycosidic linkage. / Nørskov-Lauritsen, Leif; Jørgensen, Flemming S.; Jaroszewski, Jerzy W.

    In: Carbohydrate Research, Vol. 123, No. 1, 11.11.1983, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    New leads of metallo-beta-lactamase inhibitors from structure-based pharmacophore design. / Olsen, Lars; Jost, Sandra; Adolph, Hans-Werner; Pettersson, Ingrid; Hemmingsen, Lars; Jørgensen, Flemming Steen.

    In: Bioorganic & Medicinal Chemistry, Vol. 14, No. 8, 2006, p. 2627-2635.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Hvad har varme at gøre med lægemidler? / Olsen, Lars; Kasper, Christina; Kastrup, Jette Sandholm Jensen; Gajhede, Michael; Jørgensen, Flemming Steen.

    In: Lægemiddelforskning, 2006, p. 31-33.

    Research output: Contribution to journalJournal articleCommunication

  46. Published

    Computeren kan forudsige lægemidlers omdannelse. / Olsen, Lars; Bergmann, Rikke; Jørgensen, Flemming Steen.

    In: Lægemiddelforskning 2004, 2004.

    Research output: Contribution to journalJournal articleResearch

  47. Published

    Docking and scoring of metallo-beta-lactamases inhibitors. / Olsen, Lars; Pettersson, Ingrid; Hemmingsen, Lars; Adolph, Hans-Werner; Jørgensen, Flemming Steen.

    In: Journal of Computer - Aided Molecular Design, Vol. 18, No. 4, 2004, p. 287-302.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Crystal structures and photoelectron spectra of some trimethanoanthracenes, tetramethanonaphthacenes, and pentamethanopentacenes. Experimental evidence for laticyclic hyperconjugation. / Paddon-Row, Michael N.; Englehardt, Lutz M.; Skelton, Brian W.; White, Allan H.; Jørgensen, Flemming Steen; Patney, Harish K.

    In: J. Chem. Soc., Perkin Trans. 2, 1987, p. 1835-1850.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Isolation of a library of aromadendranes from Landolphia dulcis and its characterization using the VolSurf approach. / Staerk, Dan; Skole, Brian; Jørgensen, Flemming Steen; Budnik, Bogdan A; Ekpe, Patrick; Jaroszewski, Jerzy W.

    In: Journal of Natural Products, Vol. 67, No. 5, 2004, p. 799-805.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Assessing the relative importance of the biophysical properties of amino acid substitutions associated with human genetic disease. / Terp, Bent N; Cooper, David N; Christensen, Inge T; Jørgensen, Flemming Steen; Bross, Peter Gerd; Gregersen, Niels; Krawczak, Michael.

    In: Human Mutation, Vol. 20, No. 2, 2002, p. 98-109.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    A new concept for multidimensional selection of ligand conformations (MultiSelect) and multidimensional scoring (MultiScore) of protein-ligand binding affinities. / Terp, G E; Johansen, B N; Christensen, I T; Jørgensen, Flemming Steen.

    In: Journal of Medicinal Chemistry, Vol. 44, No. 14, 2001, p. 2333-43.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Structural differences of matrix metalloproteinases. Homology modeling and energy minimization of enzyme-substrate complexes. / Terp, G E; Christensen, I T; Jørgensen, Flemming Steen.

    In: Journal of Biomolecular Structure & Dynamics, Vol. 17, No. 6, 2000, p. 933-46.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Structural differences of matrix metalloproteinases with potential implications for inhibitor selectivity examined by the GRID/CPCA approach. / Terp, Gitte Elgaard; Cruciani, Gabriele; Christensen, Inge Thøger; Jørgensen, Flemming Steen.

    In: Journal of Medicinal Chemistry, Vol. 45, No. 13, 2002, p. 2675-84.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Conformational restrictions in ligand binding to the human intestinal di-/tripeptide transporter : implications for design of hPEPT1 targeted prodrugs. / Våbenø, Jon; Nielsen, Carsten Uhd; Steffansen, Bente; Lejon, Tore; Sylte, Ingebrigt; Jørgensen, Flemming Steen; Luthman, Kristina.

    In: Bioorganic & Medicinal Chemistry, Vol. 13, No. 6, 2005, p. 1977-88.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Substrate binding and catalytic mechanism in phospholipase C from Bacillus cereus. a molecular mechanics and molecular dynamics study. / da Graça Thrige, D; Buur, J R; Jørgensen, Flemming Steen.

    In: Biopolymers, Vol. 42, No. 3, 1997, p. 319-36.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 1302104