Interplay between partner and ligand facilitates the folding and binding of an intrinsically disordered protein

Research output: Contribution to journalJournal articleResearchpeer-review

  • Rogers, Joseph Matthew
  • Vladimiras Oleinikovas
  • Sarah L. Shammas
  • Chi T. Wong
  • David De Sancho
  • Christopher M. Baker
  • Jane Clarke

Protein-protein interactions are at the heart of regulatory and signaling processes in the cell. In many interactions, one or both proteins are disordered before association. However, this disorder in the unbound state does not prevent many of these proteins folding to a well-defined, ordered structure in the bound state. Here we examine a typical system, where a small disordered protein (PUMA, p53 upregulated modulator of apoptosis) folds to an α-helix when bound to a groove on the surface of a folded protein (MCL-1, induced myeloid leukemia cell differentiation protein). We follow the association of these proteins using rapid-mixing stopped flow, and examine how the kinetic behavior is perturbed by denaturant and carefully chosen mutations. We demonstrate the utility of methods developed for the study of monomeric protein folding, including β-Tanford values, Leffler α, Ö-value analysis, and coarse-grained simulations, and propose a self-consistent mechanism for binding. Folding of the disordered protein before binding does not appear to be required and few, if any, specific interactions are required to commit to association. The majority of PUMA folding occurs after the transition state, in the presence of MCL-1. We also examine the role of the side chains of folded MCL-1 that make up the binding groove and find that many favor equilibrium binding but, surprisingly, inhibit the association process.

Original languageEnglish
JournalProceedings of the National Academy of Sciences of the United States of America
Volume111
Issue number43
Pages (from-to)15420-15425
Number of pages6
ISSN0027-8424
DOIs
Publication statusPublished - 28 Oct 2014
Externally publishedYes

    Research areas

  • BCL-2, Coarse-grained simulation, Protein folding, Protein-protein interactions, Stopped flow

ID: 244650933